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dc.title | Hyaluronan oligosaccharides form double-helical duplexes in water:1,4-dioxane mixed solvent | en |
dc.contributor.author | Kolaříková, Alena | |
dc.contributor.author | Kutálková, Eva | |
dc.contributor.author | Hrnčiřík, Josef | |
dc.contributor.author | Ingr, Marek | |
dc.relation.ispartof | Carbohydrate Polymers | |
dc.identifier.issn | 0144-8617 Scopus Sources, Sherpa/RoMEO, JCR | |
dc.identifier.issn | 1879-1344 Scopus Sources, Sherpa/RoMEO, JCR | |
dc.date.issued | 2024 | |
utb.relation.volume | 326 | |
dc.type | article | |
dc.language.iso | en | |
dc.publisher | Elsevier Ltd | |
dc.identifier.doi | 10.1016/j.carbpol.2023.121632 | |
dc.relation.uri | https://www.sciencedirect.com/science/article/pii/S0144861723010974 | |
dc.relation.uri | https://www.sciencedirect.com/science/article/pii/S0144861723010974/pdfft?md5=8a048e13b7cac23a39c8bcfef4d856a1&pid=1-s2.0-S0144861723010974-main.pdf | |
dc.subject | hyaluronan | en |
dc.subject | duplex | en |
dc.subject | double helix | en |
dc.subject | mixed solvent | en |
dc.subject | ionic bond | en |
dc.subject | hydrogen bond | en |
dc.description.abstract | Hyaluronic acid (HA) is a hydrophilic natural polysaccharide consisting of alternating monosaccharide units of glucuronic acid and N-acetyl glucosamine. In aqueous solutions the electrostatic repulsion of the carboxylate groups hampers the formation of supermolecular structures that can be partially stabilized by the addition of salt. Increased permittivity of the mixed water:organic solvents causes better compensation of the negative charge of HA chains by dissolved cations which changes their interactions with other molecules. In this study we simulate interactions of two HA chains in water:1,4-dioxane and water:tert-butanol mixed solvents with varying NaCl concentrations using molecular dynamics (MD). Anti-parallel double-helix-like duplexes are formed in NaCl-containing water:1,4-dioxane mixture and remain stable even when NaCl is removed. Parallel duplexes separate after a short time. In water:tert-butanol analogous duplexes are unstable. Stability of HA duplexes is thus determined by the solvent composition and the ability of its components to separate in the solvation shell of HA molecules, as well as by the mutual orientation of the chains. | en |
utb.faculty | Faculty of Technology | |
dc.identifier.uri | http://hdl.handle.net/10563/1011789 | |
utb.identifier.obdid | 43885389 | |
utb.identifier.scopus | 2-s2.0-85177893349 | |
utb.identifier.wok | 001125438100001 | |
utb.identifier.pubmed | 38142101 | |
utb.identifier.coden | CAPOD | |
utb.source | j-scopus | |
dc.date.accessioned | 2024-02-02T10:29:28Z | |
dc.date.available | 2024-02-02T10:29:28Z | |
dc.description.sponsorship | Ministerstvo Školství, Mládeže a Tělovýchovy, MŠMT, (90254); Univerzita Tomáše Bati ve Zlíně, UTB, (IGA/FT/2022/009, IGA/FT/2023/006) | |
dc.description.sponsorship | Ministry of Education, Youth and Sports of the Czech Republic through e-INFRA CZ [90254]; Internal funding agency of Tomas Bata University in Zlin [IGA/FT/2022/009, IGA/FT/2023/006] | |
utb.ou | Department of Physics and Materials Engineering | |
utb.contributor.internalauthor | Kolaříková, Alena | |
utb.contributor.internalauthor | Kutálková, Eva | |
utb.contributor.internalauthor | Hrnčiřík, Josef | |
utb.contributor.internalauthor | Ingr, Marek | |
utb.fulltext.sponsorship | Computational resources were supplied by the project “e-Infrastruktura CZ” (e-INFRA CZ ID:90254) supported by the Ministry of Education, Youth and Sports of the Czech Republic. This work was supported by the Ministry of Education, Youth and Sports of the Czech Republic through the e-INFRA CZ (ID: 90254 ). This work was also supported by the internal funding agency of Tomas Bata University in Zlín , projects no. IGA/FT/2022/009 and IGA/FT/2023/006 to AK. | |
utb.wos.affiliation | [Kolarikova, Alena; Kutalkova, Eva; Hrncirik, Josef; Ingr, Marek] Tomas Bata Univ Zlin, Fac Technol, Dept Phys & Mat Engn, Nam TG Masaryka 5555, Zlin 76001, Czech Republic | |
utb.scopus.affiliation | Tomas Bata University in Zlín, Faculty of Technology, Department of Physics and Materials Engineering, Nám. T.G. Masaryka 5555, Zlín, 76001, Czech Republic | |
utb.fulltext.projects | 90254 | |
utb.fulltext.projects | IGA/FT/2022/009 | |
utb.fulltext.projects | IGA/FT/2023/006 |